Pseudomonas aeruginosa 3577

Strain Overview
Organism Name Pseudomonas aeruginosa 3577
Species Pseudomonas aeruginosa
Strain 3577
Description/Title Sample from Pseudomonas aeruginosa 3577
Annotated Genes 5973
Partial Genes 115
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 796
nuoD
2		 guaA
1		 mutL
3		 aroE
5		 acsA
36		 ppsA
6		 trpE
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629245.1
Assembly Status latest
Scaffolds 57
Contigs 59
Contig N50 212112
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584690
NCBI Taxonomy ID 1447532
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5956
CDS 5886
tRNA 57
pseudo 17
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2660
Cytoplasmic Membrane 1335
Periplasmic 169
Outer Membrane 172
Extracellular 74
Unknown 1321
Unknown (This protein may have multiple localization sites) 155
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

57 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF