Pseudomonas aeruginosa PAO1H2O

Strain Overview
Organism Name Pseudomonas aeruginosa PAO1H2O
Species Pseudomonas aeruginosa
Strain PAO1H2O
Description/Title Microbe sample from Pseudomonas aeruginosa PAO1H2O
Annotated Genes 5677
Partial Genes 109
Host Information
Geographic Location
Location Name USA: Bluefield, West Virginia
Isolation Source water
Sample Provider
Name Dave Messina
E-mail david_messina@cofactorgenomics.com
Institution Cofactor Genomics
Date Collected 01-Oct-2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 155
trpE
7		 nuoD
3		 guaA
36		 acsA
28		 aroE
5		 ppsA
13		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000714515.1
Assembly Status latest
Scaffolds 1
Contigs 479
Contig N50 60008
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02740985
NCBI Taxonomy ID 1147787
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa PAO1H2O.

Annotated Features

Feature Count
gene 5572
CDS 5496
pseudo 105
tRNA 63
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2516
Cytoplasmic Membrane 1278
Periplasmic 168
Outer Membrane 151
Extracellular 67
Unknown 1179
Unknown (This protein may have multiple localization sites) 137
Flagellar 14
Fimbrial 3
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa PAO1H2O. 6264404 bp 65.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF