Pseudomonas aeruginosa AZPAE12142

Strain Overview
Organism Name Pseudomonas aeruginosa AZPAE12142
Species Pseudomonas aeruginosa
Strain AZPAE12142
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5888
Partial Genes 147
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA: New York
Sample Provider
Name Veronica Kos
E-mail veronica.kos@astrazeneca.com
Institution AstraZeneca
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2706
nuoD
4
trpE
25
ppsA
6
guaA
37
aroE
182
acsA
28
mutL
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 143
Contig N50 143288
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03105385
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5841
CDS 5776
tRNA 49
pseudo 47
rRNA 3
ncRNA 3

Subcellular Localization

Localization Count
Cytoplasmic 2625
Cytoplasmic Membrane 1312
Periplasmic 163
Outer Membrane 170
Extracellular 69
Unknown 1292
Unknown (This protein may have multiple localization sites) 145
Flagellar 16
Fimbrial 4
T3SS 4

Replicons

99 replicons associated with this assembly

Antibiotic Resistance/Susceptibility

Antibiotic Phenotype PMID
amikacin resistant 25367914
meropenem resistant 25367914
levofloxacin not defined 25367914
colistin susceptible 25367914

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF