Pseudomonas sp. WCS374

Strain Overview
Organism Name Pseudomonas sp. WCS374
Species Pseudomonas sp.
Strain WCS374
Description/Title Microbe sample from Pseudomonas sp. WCS374
Annotated Genes 5489
Partial Genes 54
Host Information
Host Species Taxonomic Name Solanum tuberosum
Host Species Common Name potato
Host Species Taxonomy ID 4113
Geographic Location
Location Name Netherlands: Flevoland
Isolation Source potato rhizosphere
Sample Provider
Name Roeland Berendsen
E-mail r.l.berendsen@uu.nl
Institution Utrecht University, Utrecht, NETHERLANDS
Date Collected 1983

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000698295.1
Assembly Status latest
Scaffolds
Contigs 20
Contig N50 649972
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02740646
NCBI Taxonomy ID 1495331
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas sp. WCS374.

Annotated Features

Feature Count
gene 5464
CDS 5369
tRNA 76
pseudo 25
rRNA 18
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2336
Cytoplasmic Membrane 1233
Periplasmic 171
Outer Membrane 148
Extracellular 58
Unknown 1309
Unknown (This protein may have multiple localization sites) 114
Flagellar 19
Fimbrial 9
T3SS 2

Replicons

Name Length GC
Pseudomonas sp. WCS374. 6085054 bp 59.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF