| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas syringae pv. actinidiae ICMP 9617 |
| Species | Pseudomonas syringae pv. actinidiae |
| Strain | ICMP 9617 |
| Description/Title | Sample from Pseudomonas syringae pv. actinidiae ICMP 9617 |
| Annotated Genes | 5308 |
| Partial Genes | 176 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Actinidia deliciosa 'Hayward' |
| Host Species Common Name | kiwifruit |
| Host Species Taxonomy ID | 3627 |
| Geographic Location | |
|---|---|
| Location Name | New Zealand |
| Sample Provider | |
|---|---|
| Name | |
| Institution | Plant and Food Research, Genomics |
| Date Collected | Nov-2011 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 283 |
| Contig N50 | 39023 |
| Assembly Level | Chromosome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02740942 |
| NCBI Taxonomy ID | 1194418 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5243 |
| CDS | 5183 |
| pseudo | 65 |
| tRNA | 55 |
| rRNA | 4 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2180 |
| Cytoplasmic Membrane | 1170 |
| Periplasmic | 165 |
| Outer Membrane | 119 |
| Extracellular | 69 |
| Unknown | 1357 |
| Unknown (This protein may have multiple localization sites) | 123 |
| Flagellar | 18 |
| Fimbrial | 10 |
| T3SS | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. | 6466847 bp | 53.4% |
Replicon details
|
| Pseudomonas syringae pv. actinidiae ICMP 9617 plasmid unnamed, whole genome shotgun sequence. | 30848 bp | 49.2% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |