Pseudomonas aeruginosa 1170_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 1170_PAER
Species Pseudomonas aeruginosa
Strain 1170_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6759
Partial Genes 912
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 155
nuoD
3		 acsA
28		 guaA
36		 ppsA
13		 mutL
3		 trpE
7		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001060435.1
Assembly Status latest
Scaffolds
Contigs 827
Contig N50 19774
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197127
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6738
CDS 6704
tRNA 29
pseudo 21
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2966
Cytoplasmic Membrane 1512
Periplasmic 187
Outer Membrane 180
Extracellular 73
Unknown 1637
Unknown (This protein may have multiple localization sites) 149

Replicons

825 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF