Pseudomonas aeruginosa 993_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 993_PAER
Species Pseudomonas aeruginosa
Strain 993_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6519
Partial Genes 307
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 381
ppsA
4		 mutL
65		 acsA
11		 nuoD
4		 trpE
10		 guaA
1		 aroE
20
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001068395.1
Assembly Status latest
Scaffolds
Contigs 357
Contig N50 62609
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03198215
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6495
CDS 6460
tRNA 31
pseudo 24
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2888
Cytoplasmic Membrane 1401
Periplasmic 178
Outer Membrane 177
Extracellular 79
Unknown 1574
Unknown (This protein may have multiple localization sites) 163

Replicons

356 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF