Pseudomonas sp. 20_BN

Strain Overview
Organism Name Pseudomonas sp. 20_BN
Species Pseudomonas sp.
Strain 20_BN
Description/Title Non-tumor DNA sample from WHOLE BLOOD of a human female participant in the dbGaP study "GWAS of Lung Cancer Susceptibility in Never-Smoking Women in Asia"
Annotated Genes 3423
Partial Genes 85
Host Information
Geographic Location
Location Name Saudi Arabia
Isolation Source bank note
Sample Provider
Name
E-mail
Institution European Bioinformatics Institute
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000756775.1
Assembly Status latest
Scaffolds
Contigs 1
Contig N50 3673759
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2658259
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 3402
CDS 3342
tRNA 53
pseudo 21
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1622
Cytoplasmic Membrane 806
Periplasmic 87
Outer Membrane 70
Extracellular 28
Unknown 629
Unknown (This protein may have multiple localization sites) 100

Replicons

Name Length GC
Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence. 3673759 bp 61.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF