| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas veronii R4 |
| Species | Pseudomonas veronii |
| Strain | R4 |
| Description/Title | Microbe sample from Pseudomonas veronii |
| Annotated Genes | 5959 |
| Partial Genes | 94 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Chile |
| Isolation Source | soil |
| Sample Provider | |
|---|---|
| Name | Fabiola Altimira |
| fabi.alti@gmail.com | |
| Institution | Instituto de Investigaciones Agropecuaria |
| Date Collected | Oct-2009 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 61 |
| Contig N50 | 209571 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03286965 |
| NCBI Taxonomy ID | 76761 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5932 |
| CDS | 5869 |
| tRNA | 58 |
| pseudo | 27 |
| rRNA | 3 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2558 |
| Cytoplasmic Membrane | 1411 |
| Periplasmic | 185 |
| Outer Membrane | 154 |
| Extracellular | 67 |
| Unknown | 1353 |
| Unknown (This protein may have multiple localization sites) | 141 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas veronii strain R4 scaffold00001, whole genome shotgun sequence. | 6647193 bp | 60.8% |
Replicon details
|
| Pseudomonas veronii strain R4 scaffold00002, whole genome shotgun sequence. | 2627 bp | 51.9% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |