Pseudomonas viridiflava LMCA8

Strain Overview
Organism Name Pseudomonas viridiflava LMCA8
Species Pseudomonas viridiflava
Strain LMCA8
Description/Title Microbe sample from Pseudomonas viridiflava
Annotated Genes 5370
Partial Genes 130
Host Information
Host Species Taxonomic Name Arabidopsis thaliana
Host Species Common Name thale cress
Host Species Taxonomy ID 3702
Host Species Tissue Sampled leaf
Geographic Location
Location Name USA: Lake Michigan College, Berrien County, Michigan
Isolation Source leaf
Latitude/Longitude 42.090114 N 86.393408 W
Sample Provider
Name Matthew Perisin
E-mail perisin@uchicago.edu
Institution University of Chicago
Date Collected 2008-04-22

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000834695.1
Assembly Status latest
Scaffolds
Contigs 73
Contig N50 178639
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03267840
NCBI Taxonomy ID 33069
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5351
CDS 5262
tRNA 69
rRNA 19
pseudo 19
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2282
Cytoplasmic Membrane 1240
Periplasmic 162
Outer Membrane 119
Extracellular 49
Unknown 1280
Unknown (This protein may have multiple localization sites) 130

Replicons

73 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF