Pseudomonas aeruginosa ATCC 9027

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 9027 - Assembly GCF_001402955.1
Species Pseudomonas aeruginosa
Strain ATCC 9027
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5703
Partial Genes 221
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Canada
Sample Provider
Name Gloria Soberon-Chavez
E-mail gloria@biomedicas.unam.mx
Institution Instituto de Investigaciones Biomedicas, UNAM
Date Collected 1966

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2230
nuoD
86		 mutL
123		 acsA
87		 guaA
114		 trpE
146		 ppsA
93		 aroE
198
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001402955.1
Assembly Status latest
Scaffolds
Contigs 164
Contig N50 88762
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04045728
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5703
CDS 5641
pseudo 207
tRNA 56
rRNA 5
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2582
Cytoplasmic Membrane 1289
Periplasmic 168
Outer Membrane 158
Extracellular 46
Unknown 1254
Unknown (This protein may have multiple localization sites) 145
Flagellar 16
Fimbrial 8
Outer Membrane Vesicle 1

Replicons

145 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF