Pseudomonas aeruginosa ATCC 33362

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 33362
Species Pseudomonas aeruginosa
Strain ATCC 33362
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5885
Partial Genes 153
Host Information
Geographic Location
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 641
aroE
5		 acsA
6		 ppsA
4		 guaA
6		 mutL
5		 trpE
7		 nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001444865.1
Assembly Status latest
Scaffolds
Contigs 173
Contig N50 139782
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04028051
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5885
CDS 5823
pseudo 152
tRNA 58
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2646
Cytoplasmic Membrane 1318
Periplasmic 168
Outer Membrane 152
Extracellular 70
Unknown 1337
Unknown (This protein may have multiple localization sites) 144
Flagellar 18
Fimbrial 8
Host Associated 1
T3SS 4
Outer Membrane Vesicle 11

Replicons

170 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF