Pseudomonas fluorescens R124

Strain Overview
Organism Name Pseudomonas fluorescens R124
Species Pseudomonas fluorescens
Strain R124
Description/Title Sample from Pseudomonas fluorescens R124
Annotated Genes 5286
Partial Genes
Host Information
Geographic Location
Isolation Source orthoquartzite cave surface
Environmental Feature (?) cave wall (ENVO:00002144)
Environmental Material (?) orthoquartzite sandstone (ENVO:00002055)
Sample Provider
Name
E-mail
Institution
Date Collected 17-Oct-07

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
rpoD
~11		 ileS
31?		 gyrB
~11		 rpoB
~11		 recA
~30		 nuoD
~11		 glnS
~11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000292795.1
Assembly Status latest
Scaffolds
Contigs 78
Contig N50 206694
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471518
NCBI Taxonomy ID 743713
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence.
Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 5286
CDS 5224
tRNA 62

Subcellular Localization

Localization Count
Cytoplasmic 2116
Cytoplasmic Membrane 1299
Periplasmic 177
Outer Membrane 129
Extracellular 61
Unknown 1318
Unknown (This protein may have multiple localization sites) 124
Flagellar 19
Fimbrial 6
T3SS 2

Replicons

Name Length GC
Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. 6256692 bp 60.0%
Replicon details
Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence, whole genome shotgun sequence. 43794 bp 53.7%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF