Pseudomonas aeruginosa 9BR

Strain Overview
Organism Name Pseudomonas aeruginosa 9BR
Species Pseudomonas aeruginosa
Strain 9BR
Description/Title Sample from Pseudomonas aeruginosa 9BR
Annotated Genes 6309
Partial Genes 5
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Brazil

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 277
nuoD
27		 trpE
2		 ppsA
5		 acsA
39		 mutL
11		 guaA
9		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000223925.1
Assembly Status latest
Scaffolds 2
Contigs 2
Contig N50 6801503
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471403
NCBI Taxonomy ID 1051005
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6259
CDS 6154
tRNA 65
pseudo 50
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2756
Cytoplasmic Membrane 1339
Periplasmic 178
Outer Membrane 168
Extracellular 78
Unknown 1475
Unknown (This protein may have multiple localization sites) 160
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa 9BR 9BRScaffold1, whole genome shotgun sequence. 6801503 bp 66.1%
Replicon details
Pseudomonas aeruginosa 9BR 9BRScaffold2, whole genome shotgun sequence. 48358 bp 58.7%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF