Pseudomonas aeruginosa AATYA

Strain Overview
Organism Name Pseudomonas aeruginosa AATYA
Species Pseudomonas aeruginosa
Strain AATYA
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas aeruginosa
Annotated Genes 6525
Partial Genes 150
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Latitude/Longitude 38.984652 N 77.094709 W
Sample Provider
Name Sean Conlan
E-mail conlans@mail.nih.gov
Institution NHGRI/NIH
Date Collected 2014

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 111
guaA
5		 acsA
17		 trpE
3		 ppsA
4		 mutL
4		 aroE
5		 nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001469695.1
Assembly Status latest
Scaffolds
Contigs 135
Contig N50 171911
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03455934
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6525
CDS 6461
pseudo 150
tRNA 57
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2888
Cytoplasmic Membrane 1419
Periplasmic 179
Outer Membrane 165
Extracellular 73
Unknown 1593
Unknown (This protein may have multiple localization sites) 153
Flagellar 17
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 7

Replicons

135 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF