Pseudomonas aeruginosa AU6462

Strain Overview
Organism Name Pseudomonas aeruginosa AU6462
Species Pseudomonas aeruginosa
Strain AU6462
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6067
Partial Genes 104
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2003

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 815
guaA
61		 ppsA
6		 mutL
5		 aroE
11		 acsA
103		 trpE
8		 nuoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001554575.1
Assembly Status latest
Scaffolds
Contigs 81
Contig N50 178306
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436460
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6067
CDS 6004
pseudo 119
tRNA 55
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2712
Cytoplasmic Membrane 1368
Periplasmic 175
Outer Membrane 164
Extracellular 69
Unknown 1376
Unknown (This protein may have multiple localization sites) 146
Flagellar 17
Fimbrial 5
T3SS 4
Outer Membrane Vesicle 9

Replicons

81 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF