Pseudomonas aeruginosa AU7198

Strain Overview
Organism Name Pseudomonas aeruginosa AU7198
Species Pseudomonas aeruginosa
Strain AU7198
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5909
Partial Genes 137
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2004

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 348
trpE
7		 aroE
20		 acsA
22		 guaA
11		 nuoD
3		 mutL
3		 ppsA
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001555225.1
Assembly Status latest
Scaffolds
Contigs 91
Contig N50 130397
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436483
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5909
CDS 5840
pseudo 241
tRNA 58
rRNA 6
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2658
Cytoplasmic Membrane 1293
Periplasmic 165
Outer Membrane 152
Extracellular 68
Unknown 1379
Unknown (This protein may have multiple localization sites) 132
Flagellar 18
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 16

Replicons

91 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF