Pseudomonas aeruginosa 105777

Strain Overview
Organism Name Pseudomonas aeruginosa 105777
Species Pseudomonas aeruginosa
Strain 105777
Description/Title Pathogen: Pseudomonas aeruginosa clinical sample from wounded military personnel
Annotated Genes 6892
Partial Genes 122
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease infection
Host Species Tissue Sampled wound
Geographic Location
Latitude/Longitude 29.46 N 98.41 W
Sample Provider
Name SAMMC staff
E-mail arivetba@miamioh.edu
Institution Miami University
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1419
trpE
3		 nuoD
1		 acsA
11		 mutL
7		 ppsA
3		 aroE
162		 guaA
126
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001560865.1
Assembly Status latest
Scaffolds
Contigs 106
Contig N50 177836
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03076164
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6892
CDS 6828
pseudo 123
tRNA 56
ncRNA 4
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3006
Cytoplasmic Membrane 1404
Periplasmic 180
Outer Membrane 165
Extracellular 75
Unknown 1845
Unknown (This protein may have multiple localization sites) 159
Flagellar 18
Fimbrial 8
Host Associated 1
T3SS 4
Outer Membrane Vesicle 16

Replicons

105 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF