| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas vranovensis DSM 16006 |
| Species | Pseudomonas vranovensis |
| Strain | DSM 16006 |
| Description/Title | Generic sample from Pseudomonas vranovensis DSM 16006 |
| Annotated Genes | 5239 |
| Partial Genes | 151 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Czech Republic |
| Isolation Source | soil |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 36 |
| Contigs | 43 |
| Contig N50 | 228099 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02441181 |
| NCBI Taxonomy ID | 1292031 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5207 |
| CDS | 5136 |
| tRNA | 58 |
| pseudo | 32 |
| rRNA | 8 |
| ncRNA | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2237 |
| Cytoplasmic Membrane | 1096 |
| Periplasmic | 154 |
| Outer Membrane | 139 |
| Extracellular | 41 |
| Unknown | 1027 |
| Unknown (This protein may have multiple localization sites) | 109 |
| Flagellar | 17 |
| Fimbrial | 3 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |