Pseudomonas fluorescens Q2-87

Strain Overview
Organism Name Pseudomonas fluorescens Q2-87
Species Pseudomonas fluorescens
Strain Q2-87
Description/Title Generic sample from Pseudomonas fluorescens Q2-87
Annotated Genes 5706
Partial Genes 1
Host Information
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
rpoD
~63		 recA
~6		 rpoB
~74		 ileS
~6		 nuoD
4?		 gyrB
-		 glnS
-
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000281895.1
Assembly Status latest
Scaffolds
Contigs 3
Contig N50 5449528
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02436465
NCBI Taxonomy ID 1038922
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 5686
CDS 5576
tRNA 68
pseudo 20
rRNA 19
ncRNA 15
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2476
Cytoplasmic Membrane 1318
Periplasmic 177
Outer Membrane 113
Extracellular 61
Unknown 1296
Unknown (This protein may have multiple localization sites) 135
Flagellar 19
Fimbrial 3
T3SS 4

Replicons

Name Length GC
Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. 6368168 bp 60.6%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF