Pseudomonas aeruginosa PAO1, PA3263 (rdgC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3263
Name
rdgC
Synonym: yaiD
Replicon chromosome
Genomic location 3651056 - 3651976 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1

Cross-References

RefSeq NP_251953.1
GI 15598459
Affymetrix PA3263_at
DNASU PaCD00007439
Entrez 882426
GenBank AAG06651.1
INSDC AAG06651.1
NCBI Locus Tag PA3263
protein_id(GenBank) gb|AAG06651.1|AE004748_9|gnl|PseudoCAP|PA3263
TIGR NTL03PA03263
UniParc UPI0000133492
UniProtKB Acc Q9HYX7
UniProtKB ID RDGC_PSEAE
UniRef100 UniRef100_Q9HYX7
UniRef50 UniRef50_Q9HYX7
UniRef90 UniRef90_Q9HYX7

Product

Feature Type CDS
Coding Frame 1
Product Name
recombination-associated protein RdgC
Product Name Confidence: Class 1
Synonyms
Evidence for Translation
Detected by iTRAQ (PMID:21863142).
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -11.11
Kyte-Doolittle Hydrophobicity Value -0.191
Molecular Weight (kDa) 34.0
Isoelectric Point (pI) 4.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 1
Cytoplasmic Class 3
Cytoplasmic Class 1
Additional evidence for subcellular localization
Detetected in a periplasmic protein preparation by spheroplasting by lysozyme and MgCl2.(PMID:19333994)

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2OWY DNA BINDING PROTEIN 02/17/07 The recombination-associated protein RdgC adopts a novel toroidal architecture for DNA binding Pseudomonas aeruginosa 2.5 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 122 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002347 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3263
Search term: rdgC

Human Homologs

References

Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011;2:162
PubMed ID: 21863142
The recombination-associated protein RdgC adopts a novel toroidal architecture for DNA binding.
Ha JY, Kim HK, Kim DJ, Kim KH, Oh SJ, Lee HH, Yoon HJ, Song HK, Suh SW
Nucleic Acids Res 2007;35(8):2671-81
PubMed ID: 17426134