Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4568
|
Name |
rplU
|
Replicon | chromosome |
Genomic location | 5116313 - 5116624 (- strand) |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_253258.1 |
GI | 15599764 |
Affymetrix | PA4568_rplU_at |
DNASU | PaCD00007978 |
Entrez | 881148 |
GenBank | AAG07956.1 |
INSDC | AAG07956.1 |
NCBI Locus Tag | PA4568 |
protein_id(GenBank) | gb|AAG07956.1|AE004870_7|gnl|PseudoCAP|PA4568 |
TIGR | NTL03PA04569 |
UniParc | UPI00000C5D67 |
UniProtKB Acc | Q9HVL6 |
UniProtKB ID | RL21_PSEAE |
UniRef100 | UniRef100_B7V0B1 |
UniRef50 | UniRef50_B7V0B1 |
UniRef90 | UniRef90_B7V0B1 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
50S ribosomal protein L21
|
Synonyms | |
Evidence for Translation |
Detected using LC-MS/MS (11.65 kDa, PMID:21751344)
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 7.43 |
Kyte-Doolittle Hydrophobicity Value | -0.316 |
Molecular Weight (kDa) | 11.7 |
Isoelectric Point (pI) | 10.58 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPB | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 | Pseudomonas aeruginosa | 2.82 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 100.0 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 590 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004227 (534 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4568
Search term: rplU
Search term: 50S ribosomal protein L21
|
Amino acid sequence of the ribosomal protein L21 of Escherichia coli.
Heiland I, Wittmann-Liebold B
Biochemistry 1979 Oct 16;18(21):4605-12
PubMed ID: 387076
|
Precise determination of RNA-protein contact sites in the 50 S ribosomal subunit of Escherichia coli.
Thiede B, Urlaub H, Neubauer H, Grelle G, Wittmann-Liebold B
Biochem J 1998 Aug 15;334 ( Pt 1)(Pt 1):39-42
PubMed ID: 9693099
|
Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344
|