Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA5197
|
Name |
rimK
|
Replicon | chromosome |
Genomic location | 5849143 - 5850048 (+ strand) |
Transposon Mutants | 4 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 2 transposon mutants in orthologs |
RefSeq | NP_253884.1 |
GI | 15600390 |
Affymetrix | PA5197_rimK_at |
Entrez | 880288 |
GenBank | AAG08582.1 |
INSDC | AAG08582.1 |
NCBI Locus Tag | PA5197 |
protein_id(GenBank) | gb|AAG08582.1|AE004932_9|gnl|PseudoCAP|PA5197 |
TIGR | NTL03PA05198 |
UniParc | UPI00000C5F4B |
UniProtKB Acc | Q9HTZ2 |
UniProtKB ID | RIMK_PSEAE |
UniRef100 | UniRef100_A6VDX3 |
UniRef50 | UniRef50_B2TUM8 |
UniRef90 | UniRef90_A6VDX3 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
ribosomal protein S6 modification protein
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 8.83 |
Kyte-Doolittle Hydrophobicity Value | -0.020 |
Molecular Weight (kDa) | 32.6 |
Isoelectric Point (pI) | 9.77 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7QYS | LIGASE | 01/29/22 | Crystal structure of RimK from Pseudomonas syringae DC3000 | Pseudomonas syringae pv. tomato str. DC3000 | 2.9 | X-RAY DIFFRACTION | 92.0 |
7QYR | LIGASE | 01/29/22 | Crystal structure of RimK from Pseudomonas aeruginosa PAO1 | Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.4 | X-RAY DIFFRACTION | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 370 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004781 (535 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA5197
Search term: rimK
Search term: ribosomal protein S6 modification protein
|
A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.
Oshima T, Aiba H, Baba T, Fujita K, Hayashi K, Honjo A, Ikemoto K, Inada T, Itoh T, Kajihara M, Kanai K, Kashimoto K, Kimura S, Kitagawa M, Makino K, Masuda S, Miki T, Mizobuchi K, Mori H, Motomura K, Nakamura Y, Nashimoto H, Nishio Y, Saito N, Horiuchi T
DNA Res 1996 Jun 30;3(3):137-55
PubMed ID: 8905232
|