Motif View

Internal ID 17655673
Source Database TransTermHP TERM 122
Feature Type terminator
Name
Rho-independent transcription terminator TERM 122
Sequence GCGCCTCCGGACGTCGTTTTGGTCCTGTGGGGCGC
Look for more occurrences
Start 590851
End 590885
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTCTGTCCTCGCAT(5' tail) GCGCCTC-C-GGAC(5' stem) GTCGTTTTG(loop) GTCCTGTGGGGCGC(3' stem) TTTTTTTATTCTAGG(3' tail). Confidence: 100. gap 2

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685