Motif View

Internal ID 17655749
Source Database TransTermHP TERM 229
Feature Type terminator
Name
Rho-independent transcription terminator TERM 229
Sequence CCCGGCCGCGGCCGGG
Look for more occurrences
Start 949193
End 949208
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCGAAATGAAGGAA(5' tail) CCCGGC(5' stem) CGCG(loop) GCCGGG(3' stem) TTTCTTTTGGCCTGC(3' tail). Confidence: 100. opp_overlap 949189 949185, overlap 949189

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685