Motif View

Internal ID 17657254
Source Database TransTermHP TERM 1072
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1072
Sequence CCCGGCCGCGGCCGGG
Look for more occurrences
Start 4702397
End 4702412
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCCAAAAGAAA(5' tail) CCCGGC(5' stem) CGCG(loop) GCCGGG(3' stem) TTCCTTCATTTCGAC(3' tail). Confidence: 100. opp_overlap 4702393 4702389, overlap 4702393

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685