| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa LESB58 |
| Species | Pseudomonas aeruginosa |
| Strain | LESB58 |
| Description/Title | Pseudomonas aeruginosa LESB58 - hypervirulent human isolate |
| Annotated Genes | 6028 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Host Species Tissue Sampled | lung |
| Geographic Location | |
|---|---|
| Location Name | United Kingdom: Liverpool |
| Isolation Source | sputum |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 1988 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 146 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Gapless Chromosome |
| Percent GC | 66.3 |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMEA1705916 |
| NCBI Taxonomy ID | 557722 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas aeruginosa LESB58 chromosome, complete genome. |
| Feature | Count |
|---|---|
| gene | 6028 |
| CDS | 5927 |
| tRNA | 67 |
| pseudo | 34 |
| ncRNA | 21 |
| rRNA | 13 |
| Localization | Count |
|---|---|
| No localization assigned and computational localization prediction using PSORTB not performed | 6 |
| Cytoplasmic | 2695 |
| Cytoplasmic Membrane | 1323 |
| Periplasmic | 172 |
| Outer Membrane | 170 |
| Extracellular | 74 |
| Unknown | 1379 |
| Unknown (This protein may have multiple localization sites) | 146 |
| Flagellar | 18 |
| Fimbrial | 6 |
| Host Associated | 6 |
| T3SS | 3 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas aeruginosa LESB58 chromosome, complete genome. | 6601757 bp | 66.3% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |