Strain Overview | |
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Organism Name | Pseudomonas abietaniphila ATCC 700689 |
Species | Pseudomonas abietaniphila |
Strain | ATCC 700689 |
Description/Title | Pseudomonas abietaniphila LMG 20220 |
Annotated Genes | 6535 |
Partial Genes | 107 |
Host Information | |
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Host Species Taxonomic Name | not applicable |
Geographic Location | |
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Location Name | missing |
Isolation Source | missing |
Latitude/Longitude | missing |
Environmental Feature (?) | missing |
Environmental Material (?) | missing |
Sample Provider | |
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Name | |
Institution | DOE Joint Genome Institute |
Date Collected | not collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 54 |
Contig N50 | 357714 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN05216605 |
NCBI Taxonomy ID | 89065 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6535 |
CDS | 6468 |
pseudo | 128 |
tRNA | 58 |
rRNA | 5 |
ncRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 2758 |
Cytoplasmic Membrane | 1510 |
Periplasmic | 224 |
Outer Membrane | 108 |
Extracellular | 60 |
Unknown | 1665 |
Unknown (This protein may have multiple localization sites) | 143 |
Flagellar | 22 |
Fimbrial | 4 |
T3SS | 2 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |