Pseudomonas aeruginosa PAO1, PA0056

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 7 62 1.1E-17
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 3 91 1.8E-24
SUPERFAMILY SSF53850 88 294 6.52E-52
Gene3D G3DSA:3.40.190.10 163 262 2.2E-67
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 291 4.9E-48
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 5 84 1.19E-20
CDD cd08422 PBP2_CrgA_like 92 287 2.85548E-79
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 59 25.053
Gene3D G3DSA:3.40.190.10 92 289 2.2E-67

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.