Pseudomonas aeruginosa PAO1, PA0090 (clpV1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0019538 protein metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF81923
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00300
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class
Translation, post-translational modification, degradation Other PAO1 genes in this class
Chaperones & heat shock proteins Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00009 AAA 212 367 3.78822E-15
Gene3D G3DSA:3.40.50.300 585 802 1.9E-65
Coils Coil 531 558 -
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 631 797 1.9E-38
Gene3D G3DSA:3.40.50.300 375 579 1.1E-44
SMART SM00382 IPR003593 AAA+ ATPase domain 632 775 2.5E-9
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 581 878 5.57E-63
SUPERFAMILY SSF81923 IPR036628 Clp, N-terminal domain superfamily 12 133 1.41E-17
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 519 9.83E-73
SMART SM01086 IPR019489 Clp ATPase, C-terminal 804 896 5.4E-11
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 681 699 4.6E-30
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 804 878 1.4E-12
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 710 728 4.6E-30
Gene3D G3DSA:3.40.50.300 183 373 1.2E-63
ProSitePatterns PS00870 Chaperonins clpA/B signature 1. IPR018368 ClpA/B, conserved site 1 325 337 -
Gene3D G3DSA:1.10.8.60 804 900 2.1E-9
Coils Coil 443 463 -
Coils Coil 474 508 -
SMART SM00382 IPR003593 AAA+ ATPase domain 229 370 4.8E-10
Gene3D G3DSA:1.10.1780.10 IPR036628 Clp, N-terminal domain superfamily 1 161 1.5E-44
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 636 654 4.6E-30
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 373 468 3.0E-28
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 743 757 4.6E-30
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 2.3E-9
CDD cd00009 AAA 606 754 2.24961E-15
TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family IPR017729 Type VI secretion system, ATPase ClpV1 13 888 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.