Pseudomonas aeruginosa PAO1, PA0230 (pcaB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015976 carbon utilization
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Biological Process GO:0044248 cellular catabolic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0047472 3-carboxy-cis,cis-muconate cycloisomerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02426
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019619 3,4-dihydroxybenzoate catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02426
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Aromatic compound catabolism ECO:0000037
not_recorded
PseudoCyc PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY protocatechuate degradation II (ortho-cleavage pathway) 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae01220 Degradation of aromatic compounds 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.40.30 366 453 2.0E-33
Gene3D G3DSA:1.20.200.10 109 364 5.6E-104
PRINTS PR00145 Argininosuccinate lyase family signature 103 125 3.7E-12
PRINTS PR00145 Argininosuccinate lyase family signature 144 164 3.7E-12
Pfam PF10397 Adenylosuccinate lyase C-terminus IPR019468 Adenylosuccinate lyase C-terminal 368 445 8.3E-20
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 279 295 8.8E-25
Coils Coil 342 362 -
TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase IPR012789 3-carboxy-cis,cis-muconate cycloisomerase 9 352 0.0
PRINTS PR00145 Argininosuccinate lyase family signature 234 258 3.7E-12
CDD cd01597 pCLME 9 448 0.0
Gene3D G3DSA:1.10.275.10 IPR024083 Fumarase/histidase, N-terminal 6 108 2.3E-36
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 16 304 3.4E-67
Coils Coil 119 146 -
PRINTS PR00145 Argininosuccinate lyase family signature 279 295 3.7E-12
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 234 261 8.8E-25
SMART SM00998 IPR019468 Adenylosuccinate lyase C-terminal 367 446 5.4E-29
SUPERFAMILY SSF48557 IPR008948 L-Aspartase-like 9 449 2.2E-124
ProSitePatterns PS00163 Fumarate lyases signature. IPR020557 Fumarate lyase, conserved site 279 288 -
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 104 122 8.8E-25
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 149 167 8.8E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.