Pseudomonas aeruginosa PAO1, PA1581 (sdhC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0020037 heme binding
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9521736 Reviewed by curator
Molecular Function GO:0048039 ubiquinone binding
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9822661 Reviewed by curator
Biological Process GO:0017004 cytochrome complex assembly
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9521736 Reviewed by curator
Molecular Function GO:0008177 succinate dehydrogenase (ubiquinone) activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9822661 Reviewed by curator
Molecular Function GO:0009055 electron transfer activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 12788489 Reviewed by curator
Cellular Component GO:0045281 succinate dehydrogenase complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10978
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10978
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000104 succinate dehydrogenase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10978
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01127
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006099 tricarboxylic acid cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10978
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.1300.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc GLYCOLYSIS-TCA-GLYOX-BYPASS superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
KEGG pae00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00650 Butanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Citrate cycle (TCA cycle) ECO:0000037
not_recorded
PseudoCAP Oxidative phosphorylation ECO:0000037
not_recorded
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc TCA TCA cycle I (prokaryotic) 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
PseudoCyc TCA-GLYOX-BYPASS superpathway of glyoxylate bypass and TCA 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF81343 Fumarate reductase respiratory complex transmembrane subunits IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1 128 4.41E-36
FunFam G3DSA:1.20.1300.10:FF:000005 Succinate dehydrogenase cytochrome b556 subunit - - 1 128 3.8E-60
PIRSF PIRSF000178 SDH_cyt_b560 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit 1 128 4.5E-32
PANTHER PTHR10978 SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT IPR014314 Succinate dehydrogenase, cytochrome b556 subunit 3 123 1.3E-21
Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit 6 122 5.4E-32
Gene3D G3DSA:1.20.1300.10 Fumarate reductase/succinate dehydrogenase, transmembrane subunit IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1 128 6.3E-38
CDD cd03499 SQR_TypeC_SdhC IPR014314 Succinate dehydrogenase, cytochrome b556 subunit 9 125 1.70522E-43
NCBIfam TIGR02970 JCVI: succinate dehydrogenase, cytochrome b556 subunit IPR014314 Succinate dehydrogenase, cytochrome b556 subunit 8 126 1.5E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.