Pseudomonas aeruginosa PAO1, PA1656 (hsiA2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| LasR binding site | 1803325 | 1803340 | + |
|
Details | |
| transcription initiation site | 1803380 | 1803380 | + |
|
22665491 | Details |
| putative Las-Rhl box | 1803323 | 1803342 | + |
|
22665491 | Details |
| putative fur box | 1803581 | 1803598 | + |
|
22665491 | Details |
| -35 element (sigma 70) | 1803343 | 1803348 | + |
|
22665491 | Details |
| -10 element (sigma 70) | 1803366 | 1803374 | + |
|
22665491 | Details |
| -35 element (sigma 70) | 1803560 | 1803565 | + |
|
22665491 | Details |
| -10 element (sigma 70) | 1803580 | 1803588 | + |
|
22665491 | Details |
| LasR binding site | 1803325 | 1803340 | + |
ECO:0000314
direct assay evidence used in manual assertion |
19682264 | Details |
| OxyR binding site | 1803527 | 1803541 | + |
ECO:0000314
direct assay evidence used in manual assertion |
22275523 | Details |
| Inverted repeat: GCAAGAAGTTGC-N93-GCAACTTCTTGC | 1803099 | 1803215 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 1803623 | 1803625 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: TTTTCCAGCG-N9-CGCTGGAAAA | 1803716 | 1803744 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AmrZ binding site | 1805318 | 1805330 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |