Pseudomonas aeruginosa PAO1, PA1719 (pscF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0030257 type III protein secretion system complex
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 16239085 Reviewed by curator
Biological Process GO:0030254 protein secretion by the type III secretion system
IGC
Inferred from Genomic Context 		ECO:0000317
genomic context evidence used in manual assertion		 8971719 Reviewed by curator
Biological Process GO:0030254 protein secretion by the type III secretion system
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 16239085 Reviewed by curator
Biological Process GO:0030254 protein secretion by the type III secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02105
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0030257 type III protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02105
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015031 protein transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Type III secretion system ECO:0000037
not_recorded
PseudoCAP Type III Secretion ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR02105 JCVI: type III secretion system needle filament subunit SctF IPR011841 Type III secretion system, needle protein 13 85 1.6E-21
Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF IPR021123 Type III secretion, needle-protein-like 13 85 2.2E-27
FunFam G3DSA:1.20.58.90:FF:000014 Type III secretion apparatus needle protein YscF - - 3 84 2.8E-52
Coils Coil Coil - - 17 41 -
Gene3D G3DSA:1.20.58.90 - - - 3 84 5.9E-19
SUPERFAMILY SSF140129 MxiH-like IPR037203 Type III secretion, needle-protein-like superfamily 8 81 1.83E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.