Pseudomonas aeruginosa PAO1, PA2014 (liuB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008300 isoprenoid catabolic process
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 16517656 Reviewed by curator
Molecular Function GO:0004485 methylcrotonoyl-CoA carboxylase activity
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 18469096 Reviewed by curator
Molecular Function GO:0004485 methylcrotonoyl-CoA carboxylase activity
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 16517656 Reviewed by curator

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Acyclic isoprenoid catabolism ECO:0000037
not_recorded
PseudoCyc LEUDEG-PWY leucine degradation I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747
KEGG pae00280 Valine, leucine and isoleucine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc LEU-DEG2-PWY L-leucine degradation I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion 		12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR22855 ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED IPR045190 Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like 2 535 0.0
Gene3D G3DSA:3.90.226.10 - - - 1 272 1.0E-103
SUPERFAMILY SSF52096 ClpP/crotonase IPR029045 ClpP/crotonase-like domain superfamily 23 270 2.99E-74
SUPERFAMILY SSF52096 ClpP/crotonase IPR029045 ClpP/crotonase-like domain superfamily 237 517 5.97E-91
Pfam PF01039 Carboxyl transferase domain IPR034733 Acetyl-CoA carboxylase 48 525 0.0
Gene3D G3DSA:3.90.226.10 - - - 273 535 1.2E-104
FunFam G3DSA:3.90.226.10:FF:000004 Methylcrotonoyl-CoA carboxylase beta chain - - 274 535 0.0
FunFam G3DSA:3.90.226.10:FF:000007 Methylcrotonoyl-CoA carboxylase subunit beta - - 2 272 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.