Pseudomonas aeruginosa PAO1, PA2206

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1901031 regulation of response to reactive oxygen species
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 23382903 Reviewed by curator
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 23382903 Reviewed by curator
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 13 123 1.47E-22
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 104 312 7.19E-39
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 102 307 2.1E-40
Gene3D G3DSA:3.40.190.290 - - - 106 312 1.3E-38
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 16 75 3.1E-17
FunFam G3DSA:1.10.10.10:FF:000628 LysR family transcriptional regulator - - 14 100 1.1E-55
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 14 312 7.5E-65
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 14 100 3.0E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.