Pseudomonas aeruginosa PAO1, PA2289
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GAAGGGGCTTTGCCAAGGG-N14-CCCTTGGCAAAGCCCCTTC | 2518589 | 2518640 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CCTTCCGGGCC-N2-GGCCCGGAAGG | 2518636 | 2518659 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CGGCGTGGCCT-N90-AGGCCACGCCG | 2518810 | 2518921 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 554 | 2518592 | 2518637 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: AGCCGCGACG-N2-CGTCGCGGCT | 2517427 | 2517448 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| LexA binding site | 2516350 | 2516365 | - |
ECO:0000314
direct assay evidence used in manual assertion |
17015649 | Details |
| Inverted repeat: CGCCAGCGCGC-N65-GCGCGCTGGCG | 2515952 | 2516038 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: TTCCGATTACTGTA-N6-TACAGTAATCGGAA | 2516341 | 2516374 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 2516317 | 2516321 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |