Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0016987 | sigma factor activity | Inferred from Sequence or Structural Similarity | ECO:0000250 sequence similarity evidence used in manual assertion |
16484199 | Reviewed by curator |
Biological Process | GO:0034756 | regulation of iron ion transport | Inferred from Mutant Phenotype | ECO:0000315 mutant phenotype evidence used in manual assertion |
16484199 | Reviewed by curator |
Molecular Function | GO:0016987 | sigma factor activity | Inferred from Mutant Phenotype | ECO:0000315 mutant phenotype evidence used in manual assertion |
16484199 | Reviewed by curator |
Cellular Component | GO:0005829 | cytosol | Non-traceable Author Statement | ECO:0000303 non-traceable author statement used in manual assertion |
16484199 | Reviewed by curator |
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
SUPERFAMILY | SSF88946 | Sigma2 domain of RNA polymerase sigma factors | IPR013325 | RNA polymerase sigma factor, region 2 | 11 | 102 | 3.77E-16 |
Gene3D | G3DSA:1.10.1740.10 | - | - | - | 6 | 104 | 3.0E-15 |
Gene3D | G3DSA:1.10.10.10 | - | IPR036388 | Winged helix-like DNA-binding domain superfamily | 110 | 166 | 1.5E-11 |
NCBIfam | TIGR02937 | JCVI: sigma-70 family RNA polymerase sigma factor | IPR014284 | RNA polymerase sigma-70 like domain | 13 | 162 | 3.6E-20 |
FunFam | G3DSA:1.10.1740.10:FF:000009 | RNA polymerase sigma factor | - | - | 6 | 94 | 6.1E-48 |
Pfam | PF08281 | Sigma-70, region 4 | IPR013249 | RNA polymerase sigma factor 70, region 4 type 2 | 113 | 165 | 4.4E-14 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 17 | 81 | 6.2E-15 |
PANTHER | PTHR43133 | RNA POLYMERASE ECF-TYPE SIGMA FACTO | IPR039425 | RNA polymerase sigma-70 like | 9 | 162 | 1.4E-29 |
SUPERFAMILY | SSF88659 | Sigma3 and sigma4 domains of RNA polymerase sigma factors | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 91 | 165 | 3.36E-13 |