Pseudomonas aeruginosa PAO1, PA2516 (xylZ)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0044248	cellular catabolic process	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	1938949	Reviewed by curator
Molecular Function	GO:0018623	benzoate 1,2-dioxygenase activity	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	1938949	Reviewed by curator
Biological Process	GO:0006091	generation of precursor metabolites and energy	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	1938949	Reviewed by curator
Biological Process	GO:0015976	carbon utilization	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Molecular Function	GO:0016491	oxidoreductase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00175	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0051536	iron-sulfur cluster binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00111	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae00364	Fluorobenzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae01120	Microbial metabolism in diverse environments	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
PseudoCAP		Aromatic compound catabolism		ECO:0000037 not_recorded
KEGG	pae01220	Degradation of aromatic compounds	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae00622	Xylene degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae00362	Benzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00111	2Fe-2S iron-sulfur cluster binding domain	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	10	85	4.8E-15
PRINTS	PR00410	Phenol hydroxylase reductase family signature	-	-	236	245	6.4E-25
PRINTS	PR00410	Phenol hydroxylase reductase family signature	-	-	153	160	6.4E-25
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	IPR001709	Flavoprotein pyridine nucleotide cytochrome reductase	300	308	5.4E-8
CDD	cd00207	fer2	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	17	92	5.57376E-21
Gene3D	G3DSA:3.40.50.80	-	IPR039261	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	200	332	2.5E-35
PRINTS	PR00410	Phenol hydroxylase reductase family signature	-	-	196	205	6.4E-25
SUPERFAMILY	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain	IPR039261	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	204	333	3.67E-35
PANTHER	PTHR47354	NADH OXIDOREDUCTASE HCR	-	-	17	91	1.4E-73
SUPERFAMILY	SSF63380	Riboflavin synthase domain-like	IPR017938	Riboflavin synthase-like beta-barrel	76	204	4.77E-23
PRINTS	PR00410	Phenol hydroxylase reductase family signature	-	-	136	148	6.4E-25
SUPERFAMILY	SSF54292	2Fe-2S ferredoxin-like	IPR036010	2Fe-2S ferredoxin-like superfamily	1	98	1.97E-25
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	IPR001709	Flavoprotein pyridine nucleotide cytochrome reductase	236	245	5.4E-8
NCBIfam	NF040810	NCBIFAM: benzoate 1,2-dioxygenase electron transfer component BenC	-	-	3	335	0.0
Gene3D	G3DSA:2.40.30.10	Translation factors	-	-	101	199	1.4E-22
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	IPR001709	Flavoprotein pyridine nucleotide cytochrome reductase	211	230	5.4E-8
Gene3D	G3DSA:3.10.20.30	-	IPR012675	Beta-grasp domain superfamily	1	100	2.9E-27
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	IPR001709	Flavoprotein pyridine nucleotide cytochrome reductase	153	160	5.4E-8
Pfam	PF00970	Oxidoreductase FAD-binding domain	IPR008333	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	109	202	5.9E-16
CDD	cd06209	BenDO_FAD_NAD	IPR047683	Benzoate 1,2-dioxygenase reductase, FAD/NAD binding domain	106	333	0.0
PRINTS	PR00410	Phenol hydroxylase reductase family signature	-	-	300	308	6.4E-25
Pfam	PF00175	Oxidoreductase NAD-binding domain	IPR001433	Oxidoreductase FAD/NAD(P)-binding	212	314	2.0E-22
PRINTS	PR00410	Phenol hydroxylase reductase family signature	-	-	211	230	6.4E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.