Pseudomonas aeruginosa PAO1, PA2591 (vqsR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 2934438 | 2934438 | - |
|
Details | |
| LasR binding site | 2934482 | 2934501 | - |
|
Details | |
| transcription initiation site | 2934423 | 2934423 | - |
|
17449616 | Details |
| las box | 2934483 | 2934483 | - |
|
17449616 | Details |
| LasR binding site | 2934485 | 2934500 | - |
ECO:0000314
direct assay evidence used in manual assertion |
17449616 | Details |
| Shine-Dalgarno sequence | 2934531 | 2934534 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GTCCTGCGCC-N94-GGCGCAGGAC | 2933016 | 2933129 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCGCAGGACGAA-N9-TTCGTCCTGCGC | 2933121 | 2933153 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |