Pseudomonas aeruginosa PAO1, PA2652

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0050918 positive chemotaxis
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 17933940 Reviewed by curator
Biological Process GO:0071310 cellular response to organic substance
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 17933940 Reviewed by curator
Biological Process GO:0006935 chemotaxis
IMP
Inferred from Mutant Phenotype 		ECO:0000016
loss-of-function mutant phenotype evidence		 17933940 Reviewed by curator
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class
Chemotaxis Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Chemotactic transducer (MCP) ECO:0000037
not_recorded
KEGG pae02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 397 424 2.7E-24
Pfam PF00672 HAMP domain IPR003660 HAMP domain 228 280 8.1E-13
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 230 561 3.1E-103
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 252 561 3.53E-79
SMART SM00304 HAMP_11 IPR003660 HAMP domain 230 284 2.1E-12
Coils Coil Coil - - 293 317 -
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 426 455 2.7E-24
Coils Coil Coil - - 489 509 -
SMART SM01049 Cache_2_2 IPR033480 Single Cache domain 2 45 136 4.3E-26
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 15 560 2.5E-121
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 6 31 2.7E-24
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 344 526 5.5E-42
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 299 560 7.6E-79
Gene3D G3DSA:1.10.287.950 - - - 230 561 1.3E-78
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 320 349 2.7E-24
CDD cd11386 MCP_signal - - 326 525 1.01756E-53
Pfam PF17200 Single Cache domain 2 IPR033480 Single Cache domain 2 51 196 3.3E-22
CDD cd06225 HAMP - - 233 279 3.48703E-11
MobiDBLite mobidb-lite consensus disorder prediction - - 333 357 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 30 206 2.2E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.