Pseudomonas aeruginosa PAO1, PA3061 (pelD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0035438 cyclic-di-GMP binding
Interaction partner: CHEBI:49537
IPI
Inferred from Physical Interaction 		ECO:0000353
physical interaction evidence used in manual assertion		 22810222 Reviewed by curator
Biological Process GO:0044010 single-species biofilm formation
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 22176658 Reviewed by curator
Biological Process GO:0045226 extracellular polysaccharide biosynthetic process
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 22176658 Reviewed by curator
Molecular Function GO:0035438 cyclic-di-GMP binding
Interaction partner: CHEBI:49537
IPI
Inferred from Physical Interaction 		ECO:0000353
physical interaction evidence used in manual assertion		 22605337 Reviewed by curator
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13492
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.70.2880 - IPR038367 PelD, GGDEF domain superfamily 319 455 1.9E-45
Pfam PF13492 GAF domain IPR003018 GAF domain 181 304 3.9E-7
SUPERFAMILY SSF55781 GAF domain-like - - 181 313 4.32E-8
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 155 318 1.0E-52
Pfam PF16963 PelD GGDEF domain IPR031583 PelD, GGDEF domain 321 444 7.7E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.