Pseudomonas aeruginosa PAO1, PA3179

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016866 intramolecular transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00363
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 260 386 -
CDD cd02556 PseudoU_synth_RluB - - 77 244 1.36442E-84
FunFam G3DSA:3.30.70.1560:FF:000001 Pseudouridine synthase - - 145 229 1.2E-27
CDD cd00165 S4 - - 16 82 1.49018E-9
MobiDBLite mobidb-lite consensus disorder prediction - - 371 386 -
MobiDBLite mobidb-lite consensus disorder prediction - - 267 307 -
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 14 76 1.0E-7
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 15 59 1.6E-9
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 77 247 2.28E-42
FunFam G3DSA:3.10.290.10:FF:000003 Pseudouridine synthase - - 11 69 1.1E-20
PANTHER PTHR47683 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED - - 13 281 1.2E-89
MobiDBLite mobidb-lite consensus disorder prediction - - 320 359 -
FunFam G3DSA:3.30.70.580:FF:000009 Pseudouridine synthase - - 79 161 1.8E-35
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA-like 78 209 6.1E-15
Gene3D G3DSA:3.30.70.580 - IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal 79 247 2.1E-49
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 13 106 5.05E-14
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 12 69 1.9E-20
Gene3D G3DSA:3.30.70.1560 - IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain 145 229 2.1E-49
NCBIfam TIGR00093 JCVI: pseudouridine synthase IPR000748 Pseudouridine synthase, RsuA/RluB/E/F 82 244 3.3E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.