Pseudomonas aeruginosa PAO1, PA3297

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0046677	response to antibiotic	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	27014238	Reviewed by curator
Biological Process	GO:0006364	rRNA processing	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	27014238	Reviewed by curator
Molecular Function	GO:0004386	helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00847	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00382	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01967	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold	IPR011709	DEAD-box helicase, OB fold	647	723	8.0E-22
FunFam	G3DSA:3.40.50.300:FF:000575	ATP-dependent helicase hrpA	-	-	27	247	4.6E-116
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	87	391	9.2E-4
CDD	cd18791	SF2_C_RHA	-	-	249	419	2.66818E-64
Pfam	PF11898	Domain of unknown function (DUF3418)	IPR024590	RNA helicase HrpA, C-terminal	736	1323	0.0
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	248	427	5.1E-57
SMART	SM00847	ha2_5	IPR007502	Helicase-associated domain	471	561	5.9E-37
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	294	410	2.0E-11
Gene3D	G3DSA:1.20.120.1080	-	-	-	456	552	3.0E-26
SMART	SM00490	helicmild6	IPR001650	Helicase, C-terminal	311	411	1.6E-15
FunFam	G3DSA:1.10.10.2130:FF:000001	Pre-mRNA-splicing factor ATP-dependent RNA helicase	-	-	433	476	6.3E-15
Pfam	PF04408	Helicase associated domain (HA2)	IPR007502	Helicase-associated domain	474	558	1.9E-18
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	74	591	2.14E-104
PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	-	-	69	729	0.0
FunFam	G3DSA:1.20.120.1080:FF:000005	ATP-dependent helicase HrpA	-	-	457	554	4.2E-40
SMART	SM00487	ultradead3	IPR014001	Helicase superfamily 1/2, ATP-binding domain	69	254	3.7E-24
FunFam	G3DSA:3.40.50.300:FF:000439	ATP-dependent RNA helicase HrpA	-	-	248	427	2.1E-85
CDD	cd17989	DEXHc_HrpA	-	-	72	244	2.64957E-112
NCBIfam	TIGR01967	JCVI: ATP-dependent RNA helicase HrpA	IPR010222	RNA helicase HrpA	13	1323	0.0
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	20	247	1.3E-76
Coils	Coil	Coil	-	-	786	806	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.