Pseudomonas aeruginosa PAO1, PA3423

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.60 - - - 189 245 8.6E-15
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 156 240 1.3E-18
Gene3D G3DSA:3.10.450.50 - - - 1 108 2.1E-14
Gene3D G3DSA:1.10.10.60 - - - 136 188 2.9E-6
Pfam PF12680 SnoaL-like domain IPR037401 SnoaL-like domain 6 100 4.1E-10
SUPERFAMILY SSF54427 NTF2-like IPR032710 NTF2-like domain superfamily 2 107 1.26E-16
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 162 242 3.6E-19
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 208 242 6.72E-8
PANTHER PTHR43280 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 152 244 6.9E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.