Pseudomonas aeruginosa PAO1, PA3478 (rhlB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| las-box 2 upstream of rhlR gene | 3890783 | 3891032 | - |
|
Details | |
| P3 transcription initiation site | 3890810 | 3890810 | - |
|
14600219 | Details |
| P4 transcription initiation site | 3890874 | 3890874 | - |
|
14600219 | Details |
| LasR binding site | 3891015 | 3891030 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| Vfr binding site | 3890857 | 3890874 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| Vfr binding site | 3890762 | 3890780 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| Vfr binding site | 3890812 | 3890830 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| lux-box-like sequence (lasR binding site) | 3890721 | 3890740 | - |
|
9150205 | Details |
| putative LasR-operator upstream of rhlR | 3890651 | 3890745 | - |
|
9150205 | Details |
| rhlR promoter P1 | 3890670 | 3890719 | - |
|
Details | |
| P1 transcription initiation site | 3890674 | 3890674 | - |
|
14600219 | Details |
| P2 transcription initiation site | 3890681 | 3890681 | - |
|
14600219 | Details |
| LasR binding site | 3890707 | 3890722 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| LasR binding site | 3890753 | 3890768 | - |
ECO:0000314
direct assay evidence used in manual assertion |
19682264 | Details |
| Vfr binding site | 3890708 | 3890726 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |
| Vfr binding site | 3890762 | 3890780 | - |
ECO:0000314
direct assay evidence used in manual assertion |
21719541 | Details |