Pseudomonas aeruginosa PAO1, PA3528 (rnt)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0004532 exoribonuclease activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 1704882 Reviewed by curator
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 1704882 Reviewed by curator
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004540 ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06134
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06134
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class
DNA replication, recombination, modification and repair Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR30231 DNA POLYMERASE III SUBUNIT EPSILON - - 32 216 3.8E-20
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 32 206 3.6E-31
FunFam G3DSA:3.30.420.10:FF:000009 Ribonuclease T - - 21 224 5.3E-110
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 30 215 7.7E-24
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 19 224 3.5E-61
Hamap MF_00157 Ribonuclease T [rnt]. IPR005987 Ribonuclease T 1 224 112.438721
CDD cd06134 RNaseT IPR005987 Ribonuclease T 25 213 0.0
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 21 219 3.19E-57
NCBIfam TIGR01298 JCVI: ribonuclease T IPR005987 Ribonuclease T 22 221 4.7E-116

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.