Pseudomonas aeruginosa PAO1, PA3535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| LasR binding site | 3954756 | 3954771 | + |
|
Details | |
| LasR binding site | 3954757 | 3954772 | + |
ECO:0000314
direct assay evidence used in manual assertion |
19682264 | Details |
| Shine-Dalgarno sequence | 3954898 | 3954901 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GGTCGGCCCG-N59-CGGGCCGACC | 3955012 | 3955090 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: ACCTCGGCGC-N62-GCGCCGAGGT | 3957278 | 3957359 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GAGCCCCGGAG-N8-CTCCGGGGCTC | 3958114 | 3958143 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |