Pseudomonas aeruginosa PAO1, PA3539
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGCCGCCGACC-N78-GGTCGGCGGCG | 3960965 | 3961064 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AlgR binding site | 3961979 | 3962001 | + |
|
Details | |
| AlgR binding site | 3962058 | 3962078 | + |
|
Details | |
| AlgZ binding site | 3962158 | 3962193 | + |
|
Details | |
| IHF site (ihf 1) | 3962355 | 3962368 | + |
|
Details | |
| IHF site (ihf 1) | 3962376 | 3962389 | + |
|
Details | |
| AlgU binding site | 3962422 | 3962457 | + |
|
Details | |
| algD promoter | 3962415 | 3962463 | + |
|
7961422 | Details |
| algD promoter | 3962414 | 3962462 | + |
|
3108855 | Details |
| algD promoter | 3962414 | 3962462 | + |
|
2167423 | Details |
| algD promoter far-upstream sequences | 3962028 | 3962128 | + |
|
2121718 | Details |
| algD promoter | 3962413 | 3962462 | + |
|
2121708 | Details |
| algD promoter region | 3962348 | 3962404 | + |
|
3149945 | Details |
| RpoN site at algD gene | 3962422 | 3962452 | + |
|
10792721 | Details |
| RpoN retarded fragment of algD promoter | 3962354 | 3962513 | + |
|
10792721 | Details |
| RpoN protected fragment at algD promoter | 3962422 | 3962452 | + |
|
10792721 | Details |
| AlgR retarded fragment I upstream of algD gene | 3962055 | 3962163 | + |
|
Details | |
| AlgR protected fragment upstream of algD gene | 3961988 | 3962077 | + |
|
Details | |
| Region upstream of the algD gene | 3961988 | 3962072 | + |
|
1447138 | Details |
| algD promoter | 3962413 | 3962462 | + |
|
2496102 | Details |
| AlgR retarded fragment I upstream of algD gene | 3961935 | 3962324 | + |
|
1907266 | Details |
| AlgR retarded fragment II upstream of algD gene | 3962036 | 3962324 | + |
|
1907266 | Details |
| AlgR retarded fragment III upstream of algD gene | 3962126 | 3962468 | + |
|
1907266 | Details |
| AlgR protected fragment upstream of algD gene | 3961980 | 3962077 | + |
|
1907266 | Details |
| algD promoter | 3962413 | 3962462 | + |
|
1899859 | Details |
| algD promoter | 3962413 | 3962462 | + |
|
9218775 | Details |
| CysB retarded fragment 0 at algD gene | 3962401 | 3962646 | + |
|
9218775 | Details |
| IHF binding fragment E at algD gene | 3962395 | 3962569 | + |
|
9218775 | Details |
| algD promoter region | 3962348 | 3962404 | + |
|
2109318 | Details |
| algD promoter region | 3961987 | 3962423 | + |
|
1400214 | Details |
| AlgR retarded RB3 fragment at algD gene | 3962306 | 3962472 | + |
|
1400214 | Details |
| AlgR protected RB3 fragment at algD gene | 3962413 | 3962443 | + |
|
1400214 | Details |
| AlgR retarded RB2 fragment at algD gene | 3962306 | 3962335 | + |
|
1400214 | Details |
| AlgR1 retarded fragment at algD gene | 3961988 | 3962077 | + |
|
8381538 | Details |
| IHF retarded fragment at algD gene | 3962358 | 3962562 | + |
|
Details | |
| IHF-binding element 1-1 | 3962358 | 3962398 | + |
|
Details | |
| IHF-binding element 1-2 | 3962358 | 3962398 | + |
|
Details | |
| IHF binding site at algD gene | 3962378 | 3962407 | + |
|
1472055 | Details |
| IHF retarded fragment at algD gene | 3962054 | 3962468 | + |
|
1472055 | Details |
| IHF protected fragment at algD gene | 3962373 | 3962408 | + |
|
1472055 | Details |
| algD promoter | 3962413 | 3962662 | + |
|
11443106 | Details |
| algD promoter | 3962413 | 3962662 | + |
|
Details | |
| algD promoter | 3962413 | 3962662 | + |
|
14645293 | Details |
| CRP responsive element upstream of algD promoter | 3962054 | 3962303 | + |
|
1665196 | Details |
| CRP retarded fragment upstream of algD gene | 3962054 | 3962308 | + |
|
1665196 | Details |
| AlgB binding fragment upstream of algDKEGLIJF oper | 3962186 | 3962435 | + |
|
Details | |
| algR binding site | 3961988 | 3962001 | + |
|
1900366 | Details |
| algR binding site | 3962064 | 3962077 | + |
|
1900366 | Details |
| integration host factor (Ihf) binding site | 3962358 | 3962390 | + |
|
8051019 | Details |
| AlgZ binding site | 3962159 | 3962194 | + |
|
8899712 | Details |
| AlgB binding site | 3962184 | 3962234 | + |
|
17981963 | Details |
| AmrZ binding site | 3962324 | 3962336 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 3962349 | 3962361 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 3962360 | 3962372 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 3962375 | 3962387 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 3962165 | 3962186 | + |
ECO:0000314
direct assay evidence used in manual assertion |
22511872 | Details |
| Vfr binding site | 3962080 | 3962101 | + |
ECO:0000314
direct assay evidence used in manual assertion |
17159200 | Details |
| AlgR binding site | 3962064 | 3962077 | + |
ECO:0000314
direct assay evidence used in manual assertion |
1907266 | Details |
| AlgR binding site | 3961988 | 3962001 | + |
ECO:0000314
direct assay evidence used in manual assertion |
1900366 | Details |
| AlgR binding site | 3961980 | 3962002 | + |
ECO:0000314
direct assay evidence used in manual assertion |
1907266 | Details |
| IHF binding site | 3962357 | 3962369 | + |
ECO:0000314
direct assay evidence used in manual assertion |
22510163 | Details |
| IHF binding site | 3962378 | 3962390 | + |
ECO:0000314
direct assay evidence used in manual assertion |
22510163 | Details |