Pseudomonas aeruginosa PAO1, PA3571 (mmsR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:2000284 positive regulation of cellular amino acid biosynthetic process
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 1339433 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02311
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 203 246 1.16E-6
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 266 281 2.7E-5
SUPERFAMILY SSF51215 Regulatory protein AraC IPR037923 Transcription regulator HTH-like 36 187 3.53E-32
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 214 297 8.7E-25
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 50 301 8.8E-27
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 251 301 1.93E-12
Gene3D G3DSA:2.60.120.280 Regulatory protein AraC - - 47 187 7.0E-10
Gene3D G3DSA:1.10.10.60 - - - 246 302 2.8E-15
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 220 299 9.0E-16
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 281 297 2.7E-5
CDD cd06986 cupin_MmsR-like_N - - 41 127 2.10088E-24
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 47 184 4.3E-28
Gene3D G3DSA:1.10.10.60 - - - 202 245 6.8E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.